PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0445s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YC
Protein Properties Length: 219aa    MW: 24366.2 Da    PI: 4.7457
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0445s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.65.9e-56481511101
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql+sfwe+q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtd
  Cagra.0445s0002.1.p  48 QLQSFWETQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTD 137
                          89*****999999***************************************************************************** PP

                NF-YC  88 ifdflvdivprdel 101
                          ifdflvdivpr++l
  Cagra.0445s0002.1.p 138 IFDFLVDIVPREDL 151
                          ***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.22E-3315142IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.1E-3862134IPR009072Histone-fold
PfamPF008085.2E-2270133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDQQGQSSAM NYGSNPYQTN PMTTAPAGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI  60
EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA CEMFILELTL RSWNHTEENK  120
RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG GAEAATAAGY PYGYLPPGTA  180
PIGNPGMVMG NPGAYPPNPY MGQPMWQQQG PEQQDPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-414914819119HapE
4g92_C5e-414914819119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0648400.0AC064840.2 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete sequence.
GenBankAC0691440.0AC069144.9 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete sequence.
GenBankAY0627750.0AY062775.1 Arabidopsis thaliana Unknown protein (At1g54830; T22H22.22) mRNA, complete cds.
GenBankAY0816540.0AY081654.1 Arabidopsis thaliana unknown protein (At1g54830) mRNA, complete cds.
GenBankAY0875170.0AY087517.1 Arabidopsis thaliana clone 36272 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT22H220.0AC005388.1 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302805.11e-164hypothetical protein CARUB_v10020932mg
SwissprotQ9ZVL31e-146NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLR0IFY31e-164R0IFY3_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__4714__AT1G54830.11e-144(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-107nuclear factor Y, subunit C3